YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87127615\|gb\|A...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCLIRFILV LGLLISSAMV YINPTAHAEQ DQTWEKIKER GELRVGLSAD YAPMEFEHTV  60
   61 NGKTEYAGVD IDLAKKIAKD NNLKLKIVNM SFDSLLGALK TGKIDIIISG MTSTPERKKQ 120
  121 VDFSDSYMMT KNIMLVKKDK VNEYKDIKDF NNKKVGAQKG TEQEKIAQTE IENASITSLS 180
  181 RLPDVILALK SGKVEGAVVE KPVAEAYLKQ NPKLGISNVK FNEEEKDTVI AVPKDSPKLL 240
  241 SQINKTIKEV KDKGLIDKYM TNAANAMNDD SGFISKYGSF FLKGIKITIL ISLIGVALGS 300
  301 ILGAFVALMK LSKIKIISWI ASIYIEILRG TPMLVQVFIV FFGITAALGL DISALVCGTI 360
  361 ALVINSSAYI AEIIRAGINA VDKGQMEAAR SLGLNYRQTM KSVIMPQAIK NILPALGNEF 420
  421 VTLIKESSIV STIGVGEIMF NAQVVQGISF DPFTPLIVAA ALYFVLTFVL TRIMNMIEGR 480
  481 LNASD

Type	Start	End	Confidence
Signal Peptide	1	28	0.98
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	286	0.99
Transmembrane Helix	287	309	0.92
Cytoplasmic	310	326	0.78
Transmembrane Helix	327	350	0.77
Non-Cytoplasmic	351	351	0.42
Transmembrane Helix	352	371	0.67
Cytoplasmic	372	426	0.58
Transmembrane Helix	427	441	0.47
Non-Cytoplasmic	442	452	0.64
Transmembrane Helix	453	474	0.87
Cytoplasmic	475	485	0.87