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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|85107162
Protein type: Transmembrane
Type Confidence: 0.75
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSQRPPSN ALLSASAEVD DNSLRPRNRR VASNRNNATS SSLYSSPSRT SDRGASPIPA  60
   61 ARIGDVTGRN DSRLEVAAGS ARTSSPRGGR GLLDGSWAST WASVQEFTTS LLTGGESYHT 120
  121 GSERLATQTA GKQKSSSSWG PEPPNESRPR LEDVGSGSLT EREGRLRALR TASVLESHEG 180
  181 VNGGLDVSRR FKKRNSDEDL REPSQSQEAA EHLVYIHHVQ PTDTYAGIVL RYKCREDAFR 240
  241 KANGLWSRDN IQIRKWLAIP VDACEIKGRP CGGPSFSGTQ VDYLARTPEG TDPFGRDNSN 300
  301 NREFFGPSTN DRGGDDKLPT NDDERPWTHV RWVSLDSFPH PVEVARVERK VLGYFPPRRR 360
  361 KSMNTTSTMT SPRTSMDVPG TTLSGETGPM SPGSISSRRT SLIGSRPSLV GDDARPAWMR 420
  421 RPGGVGSLRN VRAPGPEKDY FNTWTNKHLP GLNIDSLPSM AVMGAETARL GFHGAEEHPT 480
  481 IVESPFEDGG DASRLNGQGS TGLDKAAAAV ENWLRGAFVK RPLGTPSLGV PKRSPLGAEE 540
  541 GDLIELTDTN SDDDRGGPVN PTSNNLQDTG LSNFEVGTSG RSATMASSLL NLAVRMPICI 600
  601 ECRHPVKTLW REGAGDKSTG HNIRLTVCKN CGRFCDKYVE HDFVVLFIDL VLIKPQVYRH 660
  661 LLHNTLMKDE DEFAYMFFLL LCTLSTLAFH GSIRFLTSSR YSPLHLLGIL PQFSRPNSVS 720
  721 TALLVSSSTK LFPILMVIWE YDVPAAARSL GWAVVANNVE ALKILLDCNY GVATLLATAG 780
  781 ALSRWAMGRA ILWAAGLDGV DSVGEHSVAE EGRVLGSLLM YAKDWLGRLA VG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle