YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85090329
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	147	0.98
Transmembrane Helix	148	167	0.93
Non-Cytoplasmic	168	239	0.64
Transmembrane Helix	240	264	0.67
Cytoplasmic	265	332	0.73
Transmembrane Helix	333	355	0.82
Non-Cytoplasmic	356	827	0.89
Transmembrane Helix	828	851	0.87
Cytoplasmic	852	868	0.78
Transmembrane Helix	869	895	0.77
Non-Cytoplasmic	896	964	0.66
Transmembrane Helix	965	987	0.84
Cytoplasmic	988	994	0.56
Transmembrane Helix	995	1014	0.65
Non-Cytoplasmic	1015	1048	0.86
Transmembrane Helix	1049	1067	0.94
Cytoplasmic	1068	1098	0.89
Transmembrane Helix	1099	1123	0.83
Non-Cytoplasmic	1124	1145	0.88
Transmembrane Helix	1146	1166	0.92
Cytoplasmic	1167	1205	0.97
Transmembrane Helix	1206	1229	0.89
Non-Cytoplasmic	1230	1251	0.84
Transmembrane Helix	1252	1266	0.63
Cytoplasmic	1267	1454	0.90
Transmembrane Helix	1455	1479	0.89
Non-Cytoplasmic	1480	1496	0.90
Transmembrane Helix	1497	1517	0.94
Cytoplasmic	1518	1553	0.92
Transmembrane Helix	1554	1577	0.90
Non-Cytoplasmic	1578	1620	0.93
Transmembrane Helix	1621	1643	0.79
Cytoplasmic	1644	1658	0.89
Transmembrane Helix	1659	1682	0.87
Non-Cytoplasmic	1683	1725	0.94
Transmembrane Helix	1726	1746	0.92
Cytoplasmic	1747	1793	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDANPADPT ALPGFGQDQP DPVRFPNTRL RNSRSASIST WTTTSGGGHS HTHSQPHNNP  60
   61 RESEQCRICR GDASPDDPLY HPCKCSGSIK WVHQECLMQW LAQTQRKHCE LCKTPFRFTK 120
  121 LYDPDMPRTV PAHIFVAHMF KYSVRKLLAW ARAALVVSVW LGWLPYFMRS VWALLFWLCE 180
  181 EGWGGPAVFS RSQNTSSSNG FSVRAYGTTV CPASPLFVAN TSPASMGAVL GRLPLNSTQF 240
  241 VNSLAGASSG AGHSFLSLLL RTVFGSSGIV DRPSPPLKEI PSQLANNVTA TLYIDQAASP 300
  301 YSNASLVHSP SLLSEVGFLR NLTRNPTVNN NIIAVLEGQI ITVLVVVCFI LIILVRDYVV 360
  361 QQQPEINERA AFANLQNVQP QVAPLNVPGP ALNGELDGGL GEEEGEEEDA GTDDEHAWDA 420
  421 QPPQPRPPPD RQPVNNPYAS DLERELGESD SSTIDEYLNL YREAGGNPDR IVELAQERGL 480
  481 EERLAYWIAL TKTMKERAAR VQANYNDGLN SSAAESSTSA AARPSGHNLE MDSTPAAPRP 540
  541 DPFDDWRYPL EEDDHQGEKA GDGSRDKGKG VATDDSDTES DSEILASLAR PRANTDGPEI 600
  601 RTYTNPLGSN SWSFSDLPED DPNSSCTEEK ASQVIATPPD LTNDNDSSNT EVEPLLASLA 660
  661 GPAESESFQE NRSQDGNRET AADARVHIGQ PTEAEHWGTN LNPERQAEPQ ALTDVSWPNL 720
  721 DEITADSPAQ APQPRGFVPR VTDFMWQGVE ADQAQQDAID IIADALMRRD DEDNVDVRDN 780
  781 PVLDNDDDVD QDDDAAAAIG LEQDAIDDAE DLEGVLELLG MRGPLAGLFQ NAIFCVLLVS 840
  841 ATIFLGLFIP YNIGRYSLWF IAKPMRPVWI LYSLCRFIQD MVVIAFGLVS HALSLVHPSL 900
  901 GLGGVARLAT KLLFGSRHAA AILEPHIEMT NAARRVGHTV INELGRVSMS EIHTFSAVSH 960
  961 EALLSVKGQV FSGFAALGSA LVFLFGGDYS TKAPIVLSAA SNATTFALGA LKTLPTALLK1020
 1021 PNLVINVNFP DASHTIDPAL AYWNGTDRFW AILAGYLTIY LAAVLYLRHG GPISSSPTGQ1080
 1081 EWEAALIDAL NQASGVMKVI LIIGIEMLVF PLYCGMLLDI ALLPLFENAT LMSRLQFTLN1140
 1141 FPMTSIFVHW FVGTAYMFHF ALFVSMCRKI MRRGVLYFIR DPDDPEFHPV RDVLERNVTT1200
 1201 QLRKIAFSAL VYGALVIICL GAVVWGLALS LPNVLPIHYS SNEPVLEFPL DLLFYNFLMP1260
 1261 LAVKFFKPGD GLHAMYTWWF RTCGRCLRIT WFLFGERKAD EEGRLRMIER GPDAQVSWWQ1320
 1321 AMFLQLDESN GIVRPWKPKF LAESTKAETS ESEPESPNIR GYVPSEAEAA TRKLSPEEGF1380
 1381 KDYLVNTKQL IPDGRFVRAP ASDQVKIPKG KTVFLEVTER NERLDGKPDA PETDLYSTTQ1440
 1441 YRLVYVPPHF RIRIFFFILL IWLFAAATGV GITIIPLVFG RWMFKLLIPE GVRTNDIYAF1500
 1501 GIGIHVLGVI VYALINIRSL SQTAKIRVAA TIASVFNNGA VRRSLAIITR IAKIIYSYAF1560
 1561 LLVVFPLMIA SVAELYIMMP LHEFMYSVPI AQDIKQVTIQ HAAALNPRHT IRVMQSWTIG1620
 1621 LLYLKLSVRG ITTWFSGSRL ALATKAVLRR GWFNPNAGVL TRAFVIPAIL LWTVAMAIPT1680
 1681 LFAKFMISWS LAETLTLRHP QAVNVDGVVD QTLYDAYVVL IYRRSFPLTA LLLLAAAAVW1740
 1741 GLLGVFQSWK MRIRDEAYLI GERLQNYGGG MPQRGLGRGT RGGWRAGMAV GGR