YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227852817, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.98
Transmembrane Helix	5	25	0.95
Cytoplasmic	26	142	0.98
Transmembrane Helix	143	161	0.92
Non-Cytoplasmic	162	180	0.84
Transmembrane Helix	181	201	0.95
Cytoplasmic	202	208	0.91
Transmembrane Helix	209	232	0.90
Non-Cytoplasmic	233	237	0.86
Transmembrane Helix	238	259	0.93
Cytoplasmic	260	266	0.87
Transmembrane Helix	267	290	0.88
Non-Cytoplasmic	291	296	0.91
Transmembrane Helix	297	320	0.89
Cytoplasmic	321	327	0.94
Transmembrane Helix	328	348	0.91
Non-Cytoplasmic	349	356	0.82
Transmembrane Helix	357	376	0.92
Cytoplasmic	377	395	0.85
Transmembrane Helix	396	419	0.88
Non-Cytoplasmic	420	426	0.86
Transmembrane Helix	427	449	0.87
Cytoplasmic	450	456	0.81
Transmembrane Helix	457	475	0.94
Non-Cytoplasmic	476	491	0.85
Transmembrane Helix	492	515	0.86
Cytoplasmic	516	528	0.85
Transmembrane Helix	529	548	0.89
Non-Cytoplasmic	549	604	0.93
Transmembrane Helix	605	623	0.96
Cytoplasmic	624	645	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTFIISYI VLALIIVGVI NLLLIRSRRK AKRQQKEQHF ATRQSNQSKF KASDLDRTTD  60
   61 QSSQHTAREE ARIDNKDNQN QVSLNKQTEG SEQDQASFTD NNESDEEVYA AKNPNSEEYK 120
  121 VNEKIKKEHK NFIFGEGVSR GKILAALLFG MFIAILNQTL LNVALPKINT EFNISASTGQ 180
  181 WLMTGFMLVN GILIPITAYL FNKYSYRKLF LVALVLFTIG SLICAISMNF PIMMVGRVLQ 240
  241 AIGAGVLMPL GSIVIITIYP PEKRGAAMGT MGIAMILAPA IGPTLSGYIV QNYHWNVMFY 300
  301 GMFIIGILAI LVGFVWFKLY QYTTNPKADI PGIIFSTIGF GALLYGFSEA GNKGWGSVEI 360
  361 ETMFAIGIIF IILFVIRELR MKAPMLNLEV LKFPTFTLTT VINMVVMLSL YGGMILLPIY 420
  421 LQNLRGFSAL DSGLLLLPGS LIMGLLGPFA GKLLDTIGLK PLAIFGIAVM TYATWELTKL 480
  481 NMDTPYMTIM GIYVLRSFGM AFIMMPMVTA AINALPGRLA SHGNAFLNTM RQLAGSIGTA 540
  541 ILVTVMTTQT TQHLSAFGEE LDKTNPVVQD HMRELASQYG GQEGAMKVLL QFVNKLATVE 600
  601 GINDAFIVAT IFSIIALILC LFLQSNKKAK ATAQKIDADN SINHE