YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DIVIB_STAAR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDDKTKNDQ QESNEDKDEL ELFTRNTSKK RRQRKRSKAT HFSNQNKDDT SQQADFDEEI  60
   61 YLINKDFKKE QGNEENNDSA SSHANDNNID DSTDSNIENE DYRYNQETDD QNESNGIAVD 120
  121 NEQHQSAPNE QNSDSNDEET VTKKERKSKV TQLKPLTLEE KRKVRRKRQK RIQYSVITIL 180
  181 VLLIAVILIY MFSPLSKIAH VNINGNNHVS TSKINKVLGV KNDSRMYTFS KKNAINDLEE 240
  241 DPLIKSVEIH KQLPNTLNVD ITENEIIALV KYKGKYLPLL ENGKLLKGSN DVKINDAPVM 300
  301 DGFKGTKEDD MIKALSEMTP EVRRYIAEVT YAPSKNKQSR IELFTTDGLQ VIGDISTISK 360
  361 KMKYYPQMSQ SLARDSSGKL KTRGYIDLSV GASFIPYRGN TSTQSESDKN VTKSSQEENQ 420
  421 AKEELQSVLN KINKQSSKNN

Type	Start	End	Confidence
Cytoplasmic	1	171	0.99
Transmembrane Helix	172	192	0.96
Non-Cytoplasmic	193	440	0.99