YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32415485, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTTTPYLTI RRPSPTTAEF TLTTCPPLTL PLRAALFGVL CLRFIAVLSV IIGIYAAFFS  60
   61 PTGLLPPPIF PSGRISFLDF DLNNFLLHIL HLLYISRPGQ YLASLAISLP PYAVLALSAL 120
  121 TSYIALFARI HTTESLLVLR GLGIQMSSSV GGGNFFRLGG GTFMKRTRFI PTEKIQDILI 180
  181 NEAFKGFEVR YYLVIVVEGE QDVVVCFPRL LPRRKIVERV WRGARGCLYE KDGPVLSAGA 240
  241 GGGGGSHGGN GAWRGGNGNG KGG

Type	Start	End	Confidence
Cytoplasmic	1	38	0.92
Transmembrane Helix	39	59	0.93
Non-Cytoplasmic	60	76	0.82
Transmembrane Helix	77	95	0.67
Cytoplasmic	96	104	0.58
Transmembrane Helix	105	127	0.86
Non-Cytoplasmic	128	136	0.58
Transmembrane Helix	137	158	0.76
Cytoplasmic	159	263	0.75