YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28918289, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLNRLLLRK GLVPLVSKST VRPAATTIPC LRQGAAASAP ASTSTSSRQA HTGARSAARP  60
   61 RLQQRSWGAL NTTLAPQQQR RTIFIQTENT PNPDSLKFLP NQKVIPDSIK TPFIEYMNAR 120
  121 STIAPPYPSP LAAQLMNIEG VTSVFYGTDF ITVTKSADAN WAHIRPEVFA LITETITSGQ 180
  181 TIVNVVERNE GEESTQESDE KDSLAYDEND SEVVGMIKEL LETRIRPAIQ EDGGDIEFRG 240
  241 FEDGIVKLKL RGACRTCDSS TVTLKNGIEG MLMHYIEEVQ GVEQVLDPEE DIALQEFQKF 300
  301 EEKLRKQKGE VPPTTVGKDS LDSVPG

Type	Start	End	Confidence
Signal Peptide	1	37	0.84
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	326	0.99