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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|85083801
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRAAVKALR ASYQCTCRGL RVSSRGSPLP LLQSSKAASS GSPTAHYNPR LGTATARYLS  60
   61 STGARDSSGT HHHSNARPEP LRSSMYVRGA FVTLLSGLVA YGAWYNSGDS NSESPIASTT 120
  121 SATTTATGAV PTRSVLVIGA DELHTGTFVG DGPISKTTSD NERVVEMLSP EQATRKLRQY 180
  181 EQSVYVNRGQ GVVRYDVAQL PSNDPIEDDH AEKIVEVPNK APSSDPSDWM FWGVFDGHSG 240
  241 WTTSAKLRQA LISFVARELN ETYKSSPDLI PSAAAVESAI KTGFTRLDDE IVHQSVQRVL 300
  301 KSNNRLVAAE HLAPALSGSC ALLSFYDSKS KLLRVACTGD SRAVLGRRSE SGKWTATALS 360
  361 TDQTGSNPDE AARLRKLHPG EEHVVRHGRV LGGLEPTRAF GDASYKWSRE LSEKLREKFF 420
  421 GRSVSPLLKT PPYVTAEPVV TTTKIEPEKG DFVVMATDGF WEMLTNEEVV GLVGKWIESQ 480
  481 AGSSSKSSGY FSFLQKGSKT ALPVESSESE KNSGNKTPIR QRQWGATGTD PMERFVVQDK 540
  541 NVATHLVRNA LGGKNQEQVS ALLTLPSPFS RRYRDDLTVQ VIFFGYDGPK TGEIVVNKEA 600
  601 TAAALAAAAA DGNKTGPVKP KL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle