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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|32415363, gi|...
Protein type: Transmembrane
Type Confidence: 0.68
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQACIFDSD EMSPAASLYG ASQFTEASHF TAENTPFDLD QQIDENYHSG FRSPRMQFAS  60
   61 PDVQTSPESA PATSRNSLSS SSTSMDSLTI DPSDIKPTEV TSAHTNEFLA SPYDNSPSPV 120
  121 ASMQDAVSPQ HPRNPQPLMP YVAPEQAQRQ YSMIQPDAMV TDGPQEQASG TNMATAQHMS 180
  181 QVIPGPVANL QMHGLPTQFI VPPSHWPAAF TYSMPHMPDG RGISFMPHGM PVNLPQMPSG 240
  241 FGGPPYHLDV LLMDRMRKKD GSGNVNGEVE IPKMRVETQA KYRLALFPLP HGVKKLHLPT 300
  301 QYISKVKQMA RPLPPPSPER LELHAVVVCT SAMENPDLKK KALMRARLGA QRQVKGEPKP 360
  361 NTDDELPGHD GGEIRICQKC IRRESKRAGR KKVKNVEEDE YWRSFESDRI IVFNAAEIQE 420
  421 WHEPKPEEVN AYHVEFYIRI ACYGRHHNDK KKGFQVIFTI VDHEGNYIAQ QLSSPIVITD 480
  481 DHKTRDSPQV DDEFIPDQPQ NGTVNPPASN GQPTPPPLSH DIQPLKRKQP TAVPPVAVTT 540
  541 PNQEISQPPS PIRPITNSSK KRRVGNLIMT PVEAIAPMPP QQVSNAAAVA KPASSASSVF 600
  601 VPPVQRHFAR PSDASQQQIN PPSLAIGATT MSYTGGSPPS TDNNDQAMFT LPGNQGLNFF 660
  661 ANPTSGNPSR DPSPSHWQNT NGGNLLSPLM RSAVGSPFAT APAPAPAPVA NPMPSVETPV 720
  721 PVKLFKVIPH QGSVDGGFEV TVLGGGFSQG IVVMFGGRQA TTTTYWGAES LVCLVPPSDT 780
  781 PGKVQVTFKN HQVRGQPVYF EYIDTRSDEL AKSALACLAQ KMGKDVNSFA NDLIQNFTNE 840
  841 GSGPSASGAP TYNHGHFENY LLNVIEAIDL DDTPNSKPKW NLASEATGKT MLHLACSLGL 900
  901 RRFTAGLLAR GANPDSRDNG GYTPLHMASL NGHAEIVRLL VAHGADHTLR TLSGFTAADV 960
  961 AKTTKVVQRL ATSRLHSRSR SLGSLPSRAT STSSFTSLQQ TTTAMASLAL ERPVSESTEP1020
 1021 EDSSSFMSDV EDSSEDSELT DGDDEPVLEM RRSSLASPPP ADENVAERQR PLVDGLGPAA1080
 1081 AVNAIREQMM AQIQQLQQML HLQNLPQLPF MLPPVVHYMP ALPGYQTAQR LAATVVPGIT1140
 1141 APRPEPNATE PTPLPPTSKE SAGWFNSLMS NNNNNSVPPP SYDESCGKGQ SGFPDEKQAS1200
 1201 IAMAAAEAAA DEKCAAIFDQ AGSSSMTIKA TTTTTPALEI DDKTGINEEV EVETSLELPV1260
 1261 MLEIGRKNAI TKEQQENLRR AHSVKKKELS RDRNLYLIWI PLLLVTLFAT VFNEHHSIWN1320
 1321 FLQMALDYLF GSTQPLENHA PHTVIGQPQP LQPLQEPVGI 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle