YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260082, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.91
Transmembrane Helix	11	32	0.90
Non-Cytoplasmic	33	64	0.89
Transmembrane Helix	65	85	0.94
Cytoplasmic	86	94	0.80
Transmembrane Helix	95	115	0.95
Non-Cytoplasmic	116	124	0.77
Transmembrane Helix	125	148	0.92
Cytoplasmic	149	156	0.83
Transmembrane Helix	157	177	0.95
Non-Cytoplasmic	178	199	0.76
Transmembrane Helix	200	219	0.84
Cytoplasmic	220	247	0.73
Transmembrane Helix	248	272	0.90
Non-Cytoplasmic	273	286	0.66
Transmembrane Helix	287	306	0.90
Cytoplasmic	307	315	0.60
Transmembrane Helix	316	335	0.91
Non-Cytoplasmic	336	338	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTSVLTKKN VSVLTILVGL IVTVFLVSLN TGTFKIPPMD VLKSLVGLGA EDQSVILFEF  60
   61 RMPRMVIAIL VGSALAMSGA ILQGLSRNPL ADPGIIGINA GAGLTVVIFV YFFFGKVGTG 120
  121 TFLSVFILPF FALVGAILAA VIIYLLAWKD GVSSTRLILV GIAVAAGFGA VSLIFSMKMT 180
  181 SNDFRFATIW LAGSLWGTDW KFVLSVLPWM VIFLPLAISK AHILNVMNLG DSTAVGLGVN 240
  241 VEKERRKLLF IAVCLAGASV AVAGGIGFIG LMAPHLARRL VGGKHQIMLP TAALIGTFLL 300
  301 LFADVISRSV LPTSEIPVGL VISVIGAPYF IYLLMRTK