YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260012, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHGKLVEFL GLTFDLSSVM MVTVAAVIVF LIAVIGTRSL ALRPTGMQNF MEWVFDFVKG  60
   61 IINSTMDWKT GGRFLTLGVT LIMFIIVSNF LGLPFMYSTV EAGEHIAWWR SPTSDPAVTL 120
  121 TLAVMVVTLT HYYGIKMKGT KEYVKGYFQP MKFLFPLKVI EEFANTLTLG LRLFGNIYAG 180
  181 EILLGLLAKL GGATFLGALG ALVPMLAWMG FSVFVGSIQA FIFVMLTMVY MAHKVSHDH

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.84
Transmembrane Helix	19	41	0.88
Cytoplasmic	42	73	0.91
Transmembrane Helix	74	96	0.90
Non-Cytoplasmic	97	115	0.89
Transmembrane Helix	116	135	0.93
Cytoplasmic	136	181	0.86
Transmembrane Helix	182	202	0.81
Non-Cytoplasmic	203	207	0.55
Transmembrane Helix	208	232	0.84
Cytoplasmic	233	239	0.85