YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49333104, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQFLWVLFP YIIFAIFIGG HIFRYNYDQF GWTSKSSELL EKKMLRIGSI LFHFGIMFVM  60
   61 GGHVMGILIP EAVYRSIGIS EHMYHVVAIS FGLPAGIASI IGLIILTYRR VTVKRIIATS 120
  121 TKGDYIALIL LLIVMLAGLS STFLNIDSKG FDYRTTIGPW FRSLFIFQPK VEYMTEVPVW 180
  181 FKIHILAGMG LFAVWPFTRL VHVFSAPIKY ISRSYVIYRR RIPNELKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.88
Transmembrane Helix	7	27	0.92
Cytoplasmic	28	46	0.94
Transmembrane Helix	47	69	0.90
Non-Cytoplasmic	70	84	0.90
Transmembrane Helix	85	108	0.90
Cytoplasmic	109	124	0.91
Transmembrane Helix	125	144	0.94
Non-Cytoplasmic	145	182	0.92
Transmembrane Helix	183	203	0.89
Cytoplasmic	204	228	0.92