YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49481497, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDERFKQA EFGAIVGIVG NIILAIIKAV IGYIGNSKAL LADAVHSASD VIGSLAVLFG  60
   61 LRAAKQPPDE DHPYGHGKAE SISAIIVAVL LFIVGIEIAI SSIKAFSQEL EPPKGITIFA 120
  121 VVLSIVVKEG MFQYKFRLGK RVNSDAIIAN AYEHRSDVFS SIAALIGICA AIIGGKFGLD 180
  181 WLVYADPIAG LFVSLLVAKM AWSIGAEAIH ATLDHVLHEE DVIPLREAVL QIDGVKKIGS 240
  241 LYAREHGHYV IVDIKVSVDP YITVEEGHRI GKHVKETLMK QDNVQNVFVH INPYSPN

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	32	0.95
Non-Cytoplasmic	33	41	0.75
Transmembrane Helix	42	61	0.89
Cytoplasmic	62	81	0.85
Transmembrane Helix	82	103	0.91
Non-Cytoplasmic	104	114	0.77
Transmembrane Helix	115	132	0.91
Cytoplasmic	133	156	0.87
Transmembrane Helix	157	175	0.94
Non-Cytoplasmic	176	182	0.68
Transmembrane Helix	183	203	0.87
Cytoplasmic	204	297	0.96