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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49481396, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWNWLRKKK KSNTTEKNET DNSEQKPNNQ EDDNKEQTRS TKHNKSNNSE QKKEEHKESS  60
   61 QDKQQNQSNQ NQQQSAKQDE SSQEQQNHSK QDDSDQGQQQ HSKQDDSNQG QQNHSKQGDS 120
  121 NQGQQNHSKQ NDSDQVQQQH SKQDDSNQGQ QNHSKQNDSD QGQQQHSKQD DSNQGQQNHS 180
  181 KQNDSDQGQQ QHSKQDDSNQ GQQNHSKQND SDQGQQQHSK QDDSNQGQQN HSKQNDSDQD 240
  241 DSSQDKQQSS KQDDLAQDKQ QHSKQDNSDQ DKQQNSKGNS IYDFSKPEKD RIHSLQDLIE 300
  301 KLKKSSDFVN YHTSDDETMP YWISYYRPSL DGEKLQKYLM PTLLERPNAS LEELKEHIPM 360
  361 SGITITNDLQ KIEDMVLKGH AIVQVNQQDQ KCMLANIAID NYRAPTPPLN ESTVIGPQEG 420
  421 FVEDIDTNIN LVRKRLPVLD LQTKEIIVGE FSKTKVVMMY LDNLAEKDNV DFLEESLRAL 480
  481 EYDQINDSAY LQELMGEKSI FPLYINTERT DRVTKALIDG KIAIFVDGSP SVLLTPVSYF 540
  541 DFFISPEDYN VSWLYATFSR ILRLIAVLFS ICATPLYVAV LNYHYELIPS DLLETLILSR 600
  601 AQVPFPPLIE ALFLELAIDL LREAGARLPM KVGQTLGIVG GIVIGQASVQ AGLTSNILLI 660
  661 IVALSALASF ITPIYKMGNA VRLLRFPFLI FAEIGGLFGI SLGFIFLFTH LFRLTSLRKP 720
  721 YALFYPTRQQ SVKDSWIRFP LTMIDTRDVQ ARPQHVKKSA KGISTKHRSD FDD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle