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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49481285, gi|...
Protein type: Transmembrane
Type Confidence: 0.73
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKQKQQKK KTHVPFRLNV LFFCVFLMFS AVIVRLGYVQ IVRGEEYKNE VERKENSTIS  60
   61 NPVPRGKIFD RYGRAVVDNA AVRTITFTKM KGSTAEARLE TAKKLADLIE VPTDKLTDRD 120
  121 KKDYWLAIHK EEAKEKITNK DRQEFKDKKI DDKELDERQR NRVTEEEVNQ LSAKDLEVLA 180
  181 IKSKMDGGYA MTPQVIKKDA TDEEYAIISE NLAQLPGVDT SVDWERKYAY DGDLFRSVLG 240
  241 GVTTSDEGLP RERLDYYLVR DYNRNDRVGK SYLEQQYEDS LHGNKAEVRN VTDKNGNILE 300
  301 TINVSKGQSG NDLNLTIDME LQKRVEEIIT KSLLKYKGGQ PLLDRAFVVM MNPKNGEVLS 360
  361 MAGKQLVNEN GETKVQDFAL GTMTSSYPMG STVKGATILT GYQTGAIQPG SVQLDEPIVL 420
  421 KGPLKKSSWK TMGYINDLTA LKMSSNVYMF KTAMNIAGVP YVRGGTLDIK QKSYDTMRYY 480
  481 FGQFGLGVKT GIDLPNETAG QRGRTDHMPG FLLDLSIGQY DTYTPLQLAQ YVSTIANGGY 540
  541 RMQPQVVKEI RQPAAKQDEV GKVVHSMEPK VLNRVDMPES QIKRVQEGFK QVFNSPGGTA 600
  601 LSYFSTAKYT AAGKTGTAQT VYGGDKEIGR NAKGERKETY NLTLVGYAPA EDPEVAFSVV 660
  661 VPWVDDKSGI NGYISRDILD AYFDLKKVEN GEATQEEIDK KNKEQDDE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle