YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30255847, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRGKGMKFV GDSRVPVARK PNIPKDYSEY PGKTEAFWPN FLLKEWMVGA VFLIGYLCLT  60
   61 VAHPSPLERM ADPTDAGYIP LPDWYFLFLY QLLKYSYASG SFTVIGAFIM PGIAFGALLL 120
  121 APFLDRGPER RPLKRPVATG FMLLSVASII FLTWESVAHH DWEAAKKQGA IVKTAPVDKN 180
  181 DDGYKLMQKN TCLTCHGDNL QGGAAAPALQ NLTLKPEEIA KIAKDGKGAM PKGIFKGTDE 240
  241 ELKKLSEFIA KYNKK

Type	Start	End	Confidence
Cytoplasmic	1	45	0.88
Transmembrane Helix	46	64	0.93
Non-Cytoplasmic	65	97	0.84
Transmembrane Helix	98	124	0.83
Cytoplasmic	125	135	0.85
Transmembrane Helix	136	154	0.90
Non-Cytoplasmic	155	255	0.89