YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259242, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGREYTFRK WHSLMGVIPV GVFLTQHLIV NNFATRGAEA FNKAAGFMEL LPFRYALEIF  60
   61 IIFLPILYHA IYGLYIAFTA KNNAVSYGYF RNWMFVFQRI SGIVTLIFIA WHVWETRIQA 120
  121 MLGKEVNYDM MADILNNPAM FAFYLVGVVS TIFHFANGLW TFCISWGITV SPRSQRISTY 180
  181 VTLAIFLGLS YVGVSALLAF IDPQLANQ

Type	Start	End	Confidence
Cytoplasmic	1	10	0.92
Transmembrane Helix	11	30	0.94
Non-Cytoplasmic	31	55	0.91
Transmembrane Helix	56	78	0.90
Cytoplasmic	79	94	0.87
Transmembrane Helix	95	114	0.94
Non-Cytoplasmic	115	139	0.96
Transmembrane Helix	140	164	0.86
Cytoplasmic	165	178	0.83
Transmembrane Helix	179	201	0.93
Non-Cytoplasmic	202	208	0.94