YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49331947, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.97
Transmembrane Helix	29	50	0.94
Non-Cytoplasmic	51	67	0.94
Transmembrane Helix	68	90	0.91
Cytoplasmic	91	99	0.81
Transmembrane Helix	100	122	0.89
Non-Cytoplasmic	123	139	0.86
Transmembrane Helix	140	163	0.86
Cytoplasmic	164	179	0.95
Transmembrane Helix	180	204	0.86
Non-Cytoplasmic	205	222	0.85
Transmembrane Helix	223	244	0.85
Cytoplasmic	245	246	0.65
Transmembrane Helix	247	267	0.85
Non-Cytoplasmic	268	290	0.91
Transmembrane Helix	291	312	0.95
Cytoplasmic	313	341	0.57
Transmembrane Helix	342	367	0.79
Non-Cytoplasmic	368	399	0.46
Transmembrane Helix	400	419	0.90
Cytoplasmic	420	433	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQFLEKYVM PVAGKVAAQR HLQAIRDGII LTMPFLIIGS FFLIISALPI PGYNDFMAGL  60
   61 FGENWQRVLG YPVSATFNIM ALIAVFGIAY RLGEYYKVDA LASGALSLVT FLLATPFQVA 120
  121 YIIPSTKESV LVEGAIPAAL MGSQGLFVAM IIALISTELY RFIVQKKIII KMPETVPPAV 180
  181 TRSFAALVPG FIVVTVIWIL RLIIENTSFG SIHNIVGQIL QEPLSILGAS LWGAIIAVIL 240
  241 VHVLWSCGIH GATIVGGVMS PVWLSLMDQN RVAFQAGQDV PNTITAQFFD LWIYMGGSGA 300
  301 TLALVVGMLL FARSQQLKSL GRLSIAPGIF NINEMVTFGM PIVMNPILLI PFILVPVVLT 360
  361 IVSYFAMEWG LVARPSGAAV PWTTPILFSG YLGSGGKISG VVLQLVNFAL AFFIYLPFLK 420
  421 IWDKQKVAEE KGE