YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30258819, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKRQLGNSD LFVTEMGLGC MSLGTSEAEA MRIIDEAIDL GINFFDTADL YDYGLNEEFV  60
   61 GKALKGKRDQ IVLTTKVGNR WTEEKNGWSW DPSKNYIKAE VKESLRRLQT DYIDLYQLHG 120
  121 GTIEDPIDET IEAFEELKKE GIIRHYGISS IRPNVIREYA KRSNIVSVLM EYSLLNRRPE 180
  181 EWFPLLNEHQ ISVIARGPLA KGILTDNNAR KIERVKEKDY LSYSYDELYG TLANVKELIV 240
  241 ESSLTGTAIQ YCLHNDTVAA VIPGASSIQQ LRENVQACKQ TQLTTEEYIQ LQQIAKCDTY 300
  301 ALHR

Type	Start	End	Confidence
Signal Peptide	1	28	0.62
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	304	0.99