YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254220, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	41	0.95
Non-Cytoplasmic	42	76	0.75
Transmembrane Helix	77	98	0.94
Cytoplasmic	99	106	0.64
Transmembrane Helix	107	126	0.95
Non-Cytoplasmic	127	135	0.68
Transmembrane Helix	136	159	0.90
Cytoplasmic	160	166	0.68
Transmembrane Helix	167	193	0.81
Non-Cytoplasmic	194	214	0.60
Transmembrane Helix	215	237	0.83
Cytoplasmic	238	257	0.60
Transmembrane Helix	258	283	0.87
Non-Cytoplasmic	284	292	0.52
Transmembrane Helix	293	318	0.83
Cytoplasmic	319	325	0.44
Transmembrane Helix	326	347	0.86
Non-Cytoplasmic	348	352	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKYIPFRIG KGELSFLMYK RACLVLFSLL VVLIGLFFAS AGMGDMKIAP YDVWQAITGN  60
   61 GDAMSNMVVN KFRMPRILIA ILVGIALAVA GCILQGLVRN PLASPDIIGI TGGASVAVVL 120
  121 FLAIFSDKNN ALTVSIHYMP LAAFIGATIV ALFVYLFAWR NDGLSPISLV LIGVGFWALT 180
  181 KAATTLFMLL APIYQASQAN VWITGTVYGS SWQNVMVLAP WVLILTVISF IAARHLNAQE 240
  241 LGDDIAVGLG VPLTKSRIFM LLLSTALIGG AVAFAGGIGF VGLMAPHISR RLVGSLYGAL 300
  301 LPVAAIVGAI LVLAADLIGR TVFTPLEIPA GVFTSAIGAP YFIYLLYKSR NS