YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254409, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.88
Transmembrane Helix	29	47	0.87
Non-Cytoplasmic	48	55	0.62
Transmembrane Helix	56	74	0.78
Cytoplasmic	75	83	0.85
Transmembrane Helix	84	104	0.92
Non-Cytoplasmic	105	111	0.67
Transmembrane Helix	112	132	0.92
Cytoplasmic	133	144	0.90
Transmembrane Helix	145	168	0.88
Non-Cytoplasmic	169	177	0.75
Transmembrane Helix	178	197	0.94
Cytoplasmic	198	203	0.89
Transmembrane Helix	204	226	0.87
Non-Cytoplasmic	227	230	0.79
Transmembrane Helix	231	251	0.88
Cytoplasmic	252	261	0.86
Transmembrane Helix	262	281	0.94
Non-Cytoplasmic	282	287	0.75
Transmembrane Helix	288	310	0.87
Cytoplasmic	311	320	0.76
Transmembrane Helix	321	344	0.76
Non-Cytoplasmic	345	351	0.69
Transmembrane Helix	352	370	0.93
Cytoplasmic	371	375	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFYFELVVI LLCTKLAGDI SVRLGQPSVL GKLIVGIIIG PAVLGIINSS ELIDELSEIG  60
   61 VLLLMFMAGL ETDLEELNRN LKSSFAVAAG GIIFPFIGGY VTGLLFGLIQ SHAIFLGLLL 120
  121 CATSVSITVQ TLRDLGKMNT RESTTILGAA VFDDVIVVIL LAFVMSFLGT QDVNITLVIV 180
  181 KKIIFFVSIV FIAWKVVPWI MKMLVPLRVT EALISAALII CFSFSYYSEM MGIAGIIGAF 240
  241 AAGIAISQTE YKHEVEHKIE PIAYAIFVPV FFVSIGMEIT FQGIGSQLWF IIIMTLIAIF 300
  301 TKLIGSGLGA RLTGFNLQSS ISIGAGMVSR GEVALIIAAN GLAANLLAKE NFTAIVIVVI 360
  361 LTTIITPPLL KKYFV