YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30255266, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.93
Transmembrane Helix	13	34	0.93
Non-Cytoplasmic	35	40	0.81
Transmembrane Helix	41	60	0.76
Cytoplasmic	61	71	0.56
Transmembrane Helix	72	96	0.87
Non-Cytoplasmic	97	122	0.76
Transmembrane Helix	123	144	0.87
Cytoplasmic	145	154	0.65
Transmembrane Helix	155	175	0.75
Non-Cytoplasmic	176	184	0.84
Transmembrane Helix	185	207	0.93
Cytoplasmic	208	223	0.89
Transmembrane Helix	224	243	0.94
Non-Cytoplasmic	244	287	0.68
Transmembrane Helix	288	321	0.71
Cytoplasmic	322	340	0.52
Transmembrane Helix	341	365	0.87
Non-Cytoplasmic	366	396	0.50
Transmembrane Helix	397	421	0.83
Cytoplasmic	422	439	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRINIRMSP PRVLTLSFIM LSIIGTCLLK LPIATTTSIS WLDALFTTVS ACTVTGLGVV  60
   61 DTGKVFTLFG QCVILTLIQV GGLGIMSFAV LIAIMLGRKI GLQNRILLQQ ALNQTNIGGV 120
  121 IRLAKALFLF SFTVECIATL ILSFEWIPKY GIAKGLYYSF FHSISAFNNA GFSVWSDNLM 180
  181 SHSHSILVNV VISSLIILGG IGFTVIVDIK KKKNFKNLTL HSKLMLSSTL IVNIIATVFI 240
  241 FIFEFHNSLS MRGFTPFEEG MAAYFQAVST RTAGFNTVDI SALSKPSLLL MMLLMFIGAG 300
  301 SASTGGGIKL TTFLIMFFGV FKFLQEQDDI VVFKKSIKDT LIVKSLTIAI ISISFIFFAI 360
  361 LILSITERVP LLMSAFEVFS AFGTVGLSMN FTPHLTIIGK AIIIFMMFFG KMGPLTLAFS 420
  421 FARKKNRKIK YPNEDILTG