YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260788, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.88
Transmembrane Helix	10	29	0.93
Non-Cytoplasmic	30	40	0.79
Transmembrane Helix	41	63	0.93
Cytoplasmic	64	82	0.95
Transmembrane Helix	83	106	0.85
Non-Cytoplasmic	107	116	0.76
Transmembrane Helix	117	136	0.93
Cytoplasmic	137	144	0.73
Transmembrane Helix	145	165	0.93
Non-Cytoplasmic	166	189	0.83
Transmembrane Helix	190	208	0.86
Cytoplasmic	209	217	0.84
Transmembrane Helix	218	241	0.87
Non-Cytoplasmic	242	270	0.92
Transmembrane Helix	271	294	0.85
Cytoplasmic	295	305	0.71
Transmembrane Helix	306	323	0.92
Non-Cytoplasmic	324	336	0.82
Transmembrane Helix	337	355	0.95
Cytoplasmic	356	368	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNTQSKISL VQFTFFVIQC QIGVGILSLP NRLHPIAKGG GWISALIAGL AIQLIILLMW  60
   61 LFLKRFPDAD MYESVCMLFG NKFGKLLGFA YVFYFTLIGM TVMLNACNVI KVWVLQATPW 120
  121 YAILLLFTIA CCYIAYNTFK VIVRFYVMAS ILILPMALLI ALGFSRADFS YIFPITEAGW 180
  181 WNIIQASKET ITAMYGFEII LIAFPKVNGS SVAKLKAISI ANGFVTLFYT FTVWICFIVF 240
  241 SPKQIELIPE PVAYLLRSLH IGIIDRTDLL FIPIWMITVV ASIASYYCAA SIGIGHIFNL 300
  301 ANHKKAVPIV GIIAFSVALF IDTPEELKVI ATFTDKFTYI FIVVLPLLFL LYSVIRNKKG 360
  361 EQYVQKKS