YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49330745, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAYEINKQL LTNEEKKELT RNKDQQAISR KKEVFRKFVS NPIAVLGTVT LLLIIIFSLI  60
   61 GESLTTFTAS EQVKEATNLP PSSEHWFGTD DLGRDIWART WAGGKISLVV GLVAAVLDIG 120
  121 LGVLIGGFSG YVRGRNRLGT LIDEWIVRGI EILYGIPYLL IVILLLIIMK PGLFTIIIAL 180
  181 ALTGWIGMAR LVRAQVLSLK QREFVIAAER LGTSHMKIIY GHIIPNLTGI IIVNLSFTIP 240
  241 AAIFSESFLS FIGLGVQSPA ASWGTMTNDA LGTLLSGEWW QLFFPSLMIA LIMFAFNAIG 300
  301 DGLQDAIDPK IIKRNRKEKK HGTAFIFRKR NVSR

Type	Start	End	Confidence
Cytoplasmic	1	37	0.99
Transmembrane Helix	38	60	0.93
Non-Cytoplasmic	61	105	0.97
Transmembrane Helix	106	131	0.87
Cytoplasmic	132	144	0.94
Transmembrane Helix	145	168	0.86
Non-Cytoplasmic	169	172	0.82
Transmembrane Helix	173	192	0.93
Cytoplasmic	193	217	0.91
Transmembrane Helix	218	244	0.79
Non-Cytoplasmic	245	281	0.74
Transmembrane Helix	282	303	0.86
Cytoplasmic	304	334	0.80