YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49330677, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRLLKQLQ NMKMNKKSLG AVALTAGIIG TTLIPQNTYA HGFVEKPGSR SALCSPTYGA  60
   61 LNVNCGSVMY EPQSLEAPKG FPQGGPVDGQ IASAGGKFGG ILDQQTADRW FKNTITGGEN 120
  121 TFTWKYTAPH LTSKWHYYIT KKGWDPNKAL TRADLEPIGT VQHDGSAASN HLTHKINVPT 180
  181 DRSGYHVILA VWDVADTANA FYNVIDVNLI NDVKPDTEAP SIPNRIQAQK VTANSIELAW 240
  241 NASTDNVGVK GYQIFRNGEM IDTVTGPHFI DKKLQPSTEY SYTVKAIDAA GNVSKESATL 300
  301 TVKTTVEAPD TEAPTQPKGL HSMGTTASSV DLMWSPSDDN IGIDHYDIYR ETEGSMKKIA 360
  361 TSNTTSYMDK YLLSNTTYKY VVKAIDVAGN ESIQSDIFTI TTKTENASYG EWDAKKAYEK 420
  421 GDRVLHEGKV YEAVQSYKGN GDPNWIYALS LWKTV

Type	Start	End	Confidence
Signal Peptide	1	40	0.71
N-region	1	31
H-region	32	37
C-region	38	40
Cleavage Site	40	41
Non-Cytoplasmic	41	455	0.99