YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30258551, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCLVVYADV VWLLNACIDF LLLLLTATVL KKKIKRWRLV LGAFIGSTIV IFAFTPFASM  60
   61 MTHPIMKLLY SLLIVYTAFG FTTFRNYTQT VFTFYFVTFM VGGGLMGTHF FLQTNEMVNG 120
  121 LVQSQSISYG DPISWLFVIF GFPVIYYFSK KRIESVEVTK IHYDQIVKLK IQLAEEELEL 180
  181 AGLIDSGNQL YDPLTKTPVM IMHISSLEHC LPAWLTEQIY SKTEIPQIPE NDSGWATKLR 240
  241 LIPFRAVGVE NQFLWAIKPE SVQIYHEGSS IVVNKVLIGL NTQQLSTNGE YQCIVHPKML 300
  301 ISQKMVIA

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.86
Transmembrane Helix	8	30	0.83
Cytoplasmic	31	36	0.95
Transmembrane Helix	37	58	0.91
Non-Cytoplasmic	59	64	0.78
Transmembrane Helix	65	84	0.92
Cytoplasmic	85	90	0.86
Transmembrane Helix	91	112	0.93
Non-Cytoplasmic	113	131	0.85
Transmembrane Helix	132	149	0.93
Cytoplasmic	150	308	0.98