YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228917473, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKLLPICA IALLTVGYSS VASADTGTVT KEEATQLQQD KAKKEAAIKE QQKIEEEKKR  60
   61 IAQEQLKNDM AKKEEAIKAQ QKSEEGKKEA AQVQQKNAAT KKEVAKPAVQ GEKLPNTASN 120
  121 NVAMMALSAC LVGIGTLFGL KRRNKVKA

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	121	0.99
Transmembrane Helix	122	140	0.79
Cytoplasmic	141	148	0.76