YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259222, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVRLSKEEN TSLQTIQTKN TSKWIMSYRK LKRNKMAFIG GIIVLFYIVI AIFAPLLAPY  60
   61 NPFDIQLVNK LQPPSMEHWM GTDDKGRDIL SRLLHGTRLS LLVGFSSVFI GALFGIILGI 120
  121 ISGYYGGWFD TVIMRIIDIM LAFPGILLAL AIVGALGPSL VNVIIAIGFF SIPMFARIVR 180
  181 ASTLTVKKLE YIDAIRALGA NDFTIIMKHI FPNILSPIIV QATLRLATAI LSAAGLSFLG 240
  241 LGAQPPSPEW GAMLSNGRDF LFTAPHIAMF PGIAMSTLVI GLNMFGDGLR DALDPRLKK

Type	Start	End	Confidence
Cytoplasmic	1	35	0.98
Transmembrane Helix	36	58	0.93
Non-Cytoplasmic	59	101	0.96
Transmembrane Helix	102	125	0.88
Cytoplasmic	126	135	0.69
Transmembrane Helix	136	155	0.92
Non-Cytoplasmic	156	159	0.72
Transmembrane Helix	160	179	0.90
Cytoplasmic	180	221	0.91
Transmembrane Helix	222	243	0.89
Non-Cytoplasmic	244	263	0.88
Transmembrane Helix	264	286	0.90
Cytoplasmic	287	299	0.92