YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30258069, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.92
Transmembrane Helix	19	41	0.93
Non-Cytoplasmic	42	74	0.91
Transmembrane Helix	75	95	0.92
Cytoplasmic	96	102	0.83
Transmembrane Helix	103	123	0.93
Non-Cytoplasmic	124	130	0.72
Transmembrane Helix	131	153	0.89
Cytoplasmic	154	161	0.75
Transmembrane Helix	162	184	0.89
Non-Cytoplasmic	185	207	0.75
Transmembrane Helix	208	229	0.88
Cytoplasmic	230	248	0.78
Transmembrane Helix	249	274	0.89
Non-Cytoplasmic	275	289	0.63
Transmembrane Helix	290	310	0.90
Cytoplasmic	311	318	0.71
Transmembrane Helix	319	337	0.96
Non-Cytoplasmic	338	344	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHKSTIRAG NNRWIHIKFI CFMSLTIICL IGSIFLAVAF GAKDIHLQTV WTAVFDYNPK  60
   61 LTQHQIIYEL RLPRVIGAAV VGAAFAVAGA VMQGVTRNPL ADAGVLGINA GAMFVVALSF 120
  121 AFFPHMPYSY LMVVSFIGAV LSTVLIFIIG SATAGGLTPM RLTIAGAVMA ALLHSLSSGV 180
  181 AIYYDLSQDL AFWYAGGVAG VKWEHLKFLV PIIFITIVFA TVLGRSISLI SMGDDVATNL 240
  241 GVKTNRTRIL GMIIVVILAG VSVSAVGSIG FVGLVIPHIA RKIVGVNYRL IIPMSALLGA 300
  301 MLLVLADLGA RTVNPPKELA IGIMVALIGV PFFLYIARKV GREL