YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228933949, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTCSKITCA SLSLLIAGSS LLYITPASIV KAEPTQNVSS SLQTSNQSDR TSVKKAMRDS  60
   61 LQLGYPGILA QISKGGKNWS YAAGIADLRT KKQMKTDFRF RIGSTTKTFI ATVLLQLAGE 120
  121 NRLNLDDSIE KWLPGVIQGN GYDANQITIR QILNHTSGIA EYLKSKDYDI MDTKKLYTAE 180
  181 ELVKMGISLP PDFAPGKGWS YSNTGYVILG ILIEKVTGNS YAEEVENRIV EPLELSNTFL 240
  241 PGNSTVIPGT KHARGYERYD GESELKDVTY SYPGSSDGDM ISTADDLNKF FSYLLSGKLL 300
  301 KEQQLKQMLT TVPTGIAEIG RYGLGIYETK LPNGVSIWGH AGASPGFSTF AGGTLGGKHT 360
  361 LAINLNGHET SYSPSDPFKN ILLAEFSK

Type	Start	End	Confidence
Signal Peptide	1	32	0.89
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	388	0.99