YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30256628, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSELEQNTR SSKKRSKRKS IKWFIIIPLF LLIFGGVGYG SLIYNKAKAV VSDAYAQIDK  60
   61 SSKRDKEVEP LKDNISILIM GVDGSEMRKS QYGEAVRTDA LLLATINKDD KSVKLVSIPR 120
  121 DSRVYIPSRK KLDKITHAHV FGGVESTRDT VERFLNVPVD YYVKFNFESF VQIVDSLGGI 180
  181 DIDVPVTFTE QDSKDQAGMI HLEKGYQHLN GEQALALART RKIDSDAMRG QRQQLVIEAI 240
  241 AKKAMSVQSI SKMGSLLDAV DKNMKTNLTF DDMLAITKNM AGSNLEMEKM QIEGTDKRIG 300
  301 GIYYYIPNEK NVKDISNKLN QHLGVTPKSV RNE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	333	0.99