YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30255342, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	29	0.81
Non-Cytoplasmic	30	46	0.90
Transmembrane Helix	47	68	0.92
Cytoplasmic	69	80	0.87
Transmembrane Helix	81	102	0.94
Non-Cytoplasmic	103	146	0.97
Transmembrane Helix	147	165	0.94
Cytoplasmic	166	183	0.83
Transmembrane Helix	184	205	0.86
Non-Cytoplasmic	206	218	0.69
Transmembrane Helix	219	239	0.92
Cytoplasmic	240	249	0.85
Transmembrane Helix	250	274	0.70
Non-Cytoplasmic	275	298	0.79
Transmembrane Helix	299	321	0.70
Cytoplasmic	322	327	0.58
Transmembrane Helix	328	353	0.82
Non-Cytoplasmic	354	411	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQTKAILLA LFLGLVVGLT LNLAAPSIFD PLNQYVFNPL GQLFIRLIKM LVVPVVFISI  60
   61 VLGAAGLGDP KQLGRIGLKS ISFFLVTTAV AISIAVTFAL IIKPGSGGNF KTEGLKYEGA 120
  121 KTETSFVDTL LNIVPDNPAK AMADGNMLQI IAFAVLIGLG IAILGKRVQG IHSLLEQGNE 180
  181 LMMYLVNLVM KLAPIGTFGL LASSVGKMGL AGVAAMFKYM IVVMLVLIIH GVFVYGGLLK 240
  241 VLAKESIVRF FKHFGPVMAI GFSTSSSNAS LPFAMKTAQE KLGVPKAISS FVQPLGATIN 300
  301 MDGTAIMQGV ATVFIAQVYG VELTVTQLAV VVLTAVLASI GTAGVPGVGL VMLTMVLNQV 360
  361 NLPVEGIALI IGIDRILDMS RTAVNISGDA ICAMIVAKSE EKYNTDQSAA S