YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49328700, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKIHTRKLF ICFCLAVVLF VPIHTFADEK REWRDEVIYS IMIDRFNNGE PKNDKQLEVG  60
   61 NLEGYQGGDI RGIIKRLDYI KEMGFTTVML SPLFESVKYD GVDVRNFQKV NEHFGTENDV 120
  121 KELVQEAHAK GMKVIFQFPL GENEQQVIDS MKWWVKEVDL DASYVMHSEK KSPAFWDDVQ 180
  181 KDMQVIKKDF RVMTKEDSEY NEKIVESFSK ADVSVKSLYD VSKKDEEFII FLDNQDTKRF 240
  241 ARIAKENMNY PPSRLKLALT YLLTSPGIPN FYYGTEIALD GGDTPDNRRL MDFKSDEKFM 300
  301 QHITKLGELR QTRPSLRRGT FELLYDKNGM SVLKRKYKGE VTLVAINNTK ETQKVALPAS 360
  361 TIGEKQELRG LLEDEIIREE NGKFYLVLKR EESNVYKVNR ETGVNWLFIS LIVGVNVLFI 420
  421 TFLIAVKKRR K

Type	Start	End	Confidence
Signal Peptide	1	27	0.99
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	402	0.99
Transmembrane Helix	403	426	0.90
Cytoplasmic	427	431	0.97