YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49476813, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILQGILDT YAQFFDLDMW IKVLQDPVSW GLIGTLVVLE GLLSADNALV LAVMVKHLPE  60
   61 EKRKKALFYG LIGAYVFRFI AIGIGMFLIK LAWVKVLGAL YLAWLSVKYF IDKRKGNAEE 120
  121 EEAHGMNQNS ILFRMFGVFW GTVAMVELMD IAFSVDSVLA AFGVSNEVWI LLLGGMLGIL 180
  181 MMRGIAGVFL KLLERIPELE TTAYILILII AAKMLLSVIH IEVSHTLFFI ILVVAFGATF 240
  241 ILHYVKNSGQ AKEEVAATKN NHK

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.75
Transmembrane Helix	30	51	0.71
Cytoplasmic	52	65	0.84
Transmembrane Helix	66	86	0.92
Non-Cytoplasmic	87	90	0.73
Transmembrane Helix	91	111	0.89
Cytoplasmic	112	130	0.96
Transmembrane Helix	131	153	0.90
Non-Cytoplasmic	154	167	0.83
Transmembrane Helix	168	190	0.87
Cytoplasmic	191	200	0.85
Transmembrane Helix	201	221	0.90
Non-Cytoplasmic	222	225	0.81
Transmembrane Helix	226	245	0.94
Cytoplasmic	246	263	0.95