YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260351, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.63
Transmembrane Helix	20	41	0.86
Cytoplasmic	42	51	0.78
Transmembrane Helix	52	72	0.88
Non-Cytoplasmic	73	103	0.88
Transmembrane Helix	104	126	0.90
Cytoplasmic	127	133	0.84
Transmembrane Helix	134	154	0.93
Non-Cytoplasmic	155	173	0.89
Transmembrane Helix	174	194	0.92
Cytoplasmic	195	227	0.94
Transmembrane Helix	228	251	0.91
Non-Cytoplasmic	252	268	0.88
Transmembrane Helix	269	289	0.88
Cytoplasmic	290	303	0.76
Transmembrane Helix	304	326	0.86
Non-Cytoplasmic	327	346	0.84
Transmembrane Helix	347	375	0.81
Cytoplasmic	376	383	0.68
Transmembrane Helix	384	403	0.92
Non-Cytoplasmic	404	422	0.77
Transmembrane Helix	423	447	0.88
Cytoplasmic	448	448	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLVIVAIGI LALLLLIMRF KLNTFISLII VSVGVALALG MPPEKIFKTI EAGLGGTLGH  60
   61 LALVFGLGAM LGKLLSDSGG AQRIAMTLVK KFGEKNIQWA VVTASFIIGI ALFFEVGLVL 120
  121 LIPIVFAISR ELKVSILYLG ISMAAALSVT HGFLPPHPGP TAIAGELHAN IGEVLLYGFM 180
  181 IAVPTVVLAG PVFTKLAKKL VPEAFTKTGN IQSLGEQKVF KLEETPGFGI SVFTALLPVL 240
  241 LMAVATIITL LQKTMGFKDN SLLATIEFIG NADTAMLISL LVAIYTMGLA RNIPIKSVME 300
  301 SCTTAISNIG MMLLIIGGGG AFKQVLIDGG VGNYVAELFK GTSLSPILLA WIIAAILRIS 360
  361 LGSATVAALT TVGLVIPMLG QSDVNLALVV LATGAGSLIA SHVNDAGFWM FKEYFGLSMK 420
  421 ETFATWTLLE TIVSVAGLGF TLLLSLFV