YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32415215, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	60	0.93
Transmembrane Helix	61	82	0.85
Non-Cytoplasmic	83	116	0.87
Transmembrane Helix	117	135	0.71
Cytoplasmic	136	154	0.71
Transmembrane Helix	155	176	0.85
Non-Cytoplasmic	177	199	0.61
Transmembrane Helix	200	221	0.84
Cytoplasmic	222	232	0.64
Transmembrane Helix	233	250	0.87
Non-Cytoplasmic	251	251	0.15
Transmembrane Helix	252	266	0.58
Cytoplasmic	267	286	0.37
Transmembrane Helix	287	313	0.79
Non-Cytoplasmic	314	607	0.52
Transmembrane Helix	608	629	0.93
Cytoplasmic	630	645	0.63
Transmembrane Helix	646	667	0.76
Non-Cytoplasmic	668	674	0.63
Transmembrane Helix	675	695	0.92
Cytoplasmic	696	704	0.69
Transmembrane Helix	705	728	0.87
Non-Cytoplasmic	729	748	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPTDGSER ATTASGADPF GDAARRRNNP PVAPTATEKP QPEDKKKALV PVKKSFLDCI  60
   61 ASWEWIVAPV VFTFLAFFTR FWQIGLSPIV TWDEAHFGKF GSHYLKREFY FDVHPPAGKL 120
  121 LVGLSGLLAG YNGSFEFKSG ETYPEEINYT FMRQFNAFWG AVCVPLAYFT AKALHFKLPA 180
  181 VWLVTLMVLC ENSYTTISRF ILLDSMLLFG TVATTLCWAK FHNLRKKSFT PEWAFWLFLT 240
  241 GLSIGFVCSV KWVGLFVTAL VGLYTIEDLW NKFGDTKMPV KVLAAHVAAR VSCLIILPFA 300
  301 VYLLSFAIHF WVLTNSGPGD AQMPSLFQAN LRGTEVGRDS PLELAIGSRV TIKNMGYGGG 360
  361 LLHSHVQTYP EGSNQQQVTC YHHKDANNDW FFYPNRREQA YDENSDEIRY IGDGSTVRLI 420
  421 HAQTGRNLHS HEIPAPMTKS DKEVSCYGNL TVGDEKDHWK IEVVKDTNSR DRSKIRTLTT 480
  481 AFRLKHEVLG CYLRAGTVNL PQWGFKQIET TCTKTNNPRD TYTHWNVESH TNPKLPPAEP 540
  541 GQYKSQFLQD FIHLNVAMMT SNNALVPDPD KQDDLASQWW QWPILHVGLR MCSWDDKTVK 600
  601 YFLLGNPLVY WGSTAALGVF GLLVVWYTLR WQRGYKELGQ DGIDQIHYAG VYPVIGWFLH 660
  661 YLPFIVMGRV TYVHHYYPAL YFAILCFGFL ADWFLRAKSK LTQGIAYGIL YATVIGLYIF 720
  721 FMPISWGMVG PNQQYKYMKW FDNWRISD