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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28917300, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLVRPHRPS PGPVRIISAS TSTSDDLTPL TIPRPSDQPT APSPQPGGRP DASGFGGRAG  60
   61 ASPERRGGGG TTPTPGRESA TPIYSSFTSP SNSASAPSLQ TNFSRPTVST TAALSTARSV 120
  121 AGTLSPIDTA PRNGPSPLTL PPTSATSTTS TSFSGRVGVH SRKHSANAGL FEPTLPSTST 180
  181 SNLDQIQAES PKLSPTPSQA QRDMSASHIA AQAAVSKSQL TQQQQQQQPQ QQQQQQQQQQ 240
  241 APPFAHQHLV HLQHRQRSQT IPPSGEHHEQ TSVANKRKSG GPMSPPILSL TEASAPRDNV 300
  301 FGSQGNHNGL AGNHTLAATA AANVVFPRSA QSSPKLPAQP TNPLTPTPPP VAAEKPAVKS 360
  361 EKSKVKLFSR PGKSSSKAES SKEKPLPSPG KLGHAFSNLQ RANYSTTSLE SNMQQPFYAH 420
  421 GNSSTATIRP AEATEKEVKE KEKKHGHFLK RQKEKLIEAY HLPLSSASSN SRPTDPTAPS 480
  481 SLYNFNLPTS PGPSSNAFKS GLDLRHGGRA LREKKNKEDK SLDDAASSYN PGGDWPGPSS 540
  541 VSSATGNLAS ALFHNEPFDS QKFGLNNMTL DDAWPFLRAK LLVIFEAEDL RLPVEDLNRI 600
  601 VTMHIQYCIS RRSPNIIIED IRDFLTTGFS SLDQSLKKTP EDRLIPALVE LWIFTFTSIL 660
  661 PYLQAVFLPL DMEFAGNGPL MTPDQARDFW GGVPASYGLS ISASSVLDIR RLVLLAFRDI 720
  721 VILPRYDTLK IMFSRLSLEF LPQSLASMAL SSPVPVPTSG FQNTAHNQGG AYQPALSTSP 780
  781 SQESQLSLSF AGSLPATMTL GMGAGFGTAP PRPNTSMSNP VPSVDPSYAS YNSNGMGTAG 840
  841 GGGDTPPGSG NRSRTISNVS FGSDHGNANR PFTPSSIQAL GAASAQAAMS TPSGVGIANL 900
  901 NLNMSTPVQQ FPLHVAPSIA SIGSNSIHGS LRDPTGGGGG GRTADQNVED SKQVTEMVGR 960
  961 MLQCMSVLAS VSAPTTPSFT SSIPNQNPHS STGNLTSYNT YSSSQDSVAT TTMTNATVPA1020
 1021 SPSGSSVAGG LPPLVQTMSS PSQFSSPSSP ATPTANSPGP LPPRPSISSL SASLATSGIS1080
 1081 GAGNNSLPNT PTAANATTPT TPTAPANAAA GGGGGGGGGG GAGGPGGGTG GYGNVPPDES1140
 1141 SRMIEELNKL LKLNWLGRGR TGRNRRGIVG GRVKRAGAGS GSGSALAFSM GAGSAGMGYA1200
 1201 SSSSYGGYAG QGGGGGGGGG GGGGGGGGGY AGSLGTGPAG VSMNSLGTTG TMGSMMSIGT1260
 1261 VGSGFGGGLL QGQQAERDRG GGGWTGTGTG SGLGTSASII AGTTGTGGMM MSSLPIGASV1320
 1321 SATTAGTVGA GAALAGAAGV SMPAAAAGSL SNEIVVDN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle