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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|85082661
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVPESRHYP GGQPYSGTNR IPNIKQFVES LDKDKKERDA KVEADLRRNH QNGEARAHVP  60
   61 TQKPGKNRRT VKDPVTGKDV EIDDIDSTHM KTAKDPQLTV PNANLGKETT VQTKASQSGE 120
  121 EYREAQDVTA PPDPIANGST SDVPIHGEKT NVLFHPTPSI TFEPMFESIE ARANVLCAFV 180
  181 FIGIVFIGKV LGGSLWGLFP LGMCVASGVF LWAKDLIRQG RDMEWSSEQK RGETAVVNLI 240
  241 PESVEWLNTA VGLIWGLINP EMFSAVADTL EDIMQASVPG VIENVKVNDI NQGSNPLRIL 300
  301 SLRALPDSHV KDMKAEIRKE DEKNKDPQEL AAEEEGGDFY NLEATVAYHS LPSSGDVSSK 360
  361 AKNMGMQLVF YLGLKGFFGV PFPVWVELNG LVATCRLRIA MAPDPPFIKT LSFTLMGLPK 420
  421 VEASCVPLMQ KGANILNLPL ISNFVNWAIA TAAGMYVAPK SMTLDIGKML QGDSIKKETQ 480
  481 ALGVLFIRIH KATGLSKQDR RGSEGGGSDP YICVSYSKFG KPQYCTRVIQ DDLNPVFSET 540
  541 CALLVTPDII KADEQLSLEL WDSDRSSADD VVGKVELSIQ KLIQHPGQMF PQTSKLRGVK 600
  601 AGSSMPGELH WEVGFFGKTQ FRKALRTDGK DHKLPQELRD KPELQDDKGT LESKEEDAVV 660
  661 HTPPDPLWPS GVLSIIVHQI VNLELENVKG SEGKRKGKEY EPARPEAGEL KEESGGKLPS 720
  721 SYCTILINDE LVYKTRTKVV SSKPIFEAGT ERFVRDWRSS IVTVTVRDSR NRQHDPIIGV 780
  781 VPLKLSDVFH TASQSTRWYP LDGGIGFGRI RISLLFRSVE LKLPPPQLGF GEIGTFEFTS 840
  841 DNITTSGFAP TDKMKIKLRT GGSSAKVPSD VCSYTPDGQQ SGITWDISGD AARNKHSKKI 900
  901 RLPVRYRYRS PVFFEFHRSG KRNTDMFAAF WLQDLVDNEE KDFDIPIWRC NNGMRLSQNY 960
  961 ITEENYRSVP DIQIEELGRL RFRGQFKPGT DRDHLKFVSD NDSRETIETW EACFAEGVRA1020
 1021 EHVESEVPPI VQRLHEESLT EGRDVLKTAR EEDKRKWLAK DGTDWTGAFG QDPEELLAEH1080
 1081 KGRRKVRTAS GGSHSSQGKS TEYEESSDEE SHDSQSHANG DAGIIGGGGS AVDGDDSTPD1140
 1141 LGIADGENAR PMNDNAGGED ANGGMNSGLN AGNGSAGEHP NANANGSAAS MVGRQSMDTQ1200
 1201 ATTSAGRSIK SASGSSSKNP IKQYKEYRSR SRDLHRQHRG LMQWKPLRNV QFAKDEALFA1260
 1261 ARRLKKVGSL SGRTPDVETE V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle