YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260148, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTYIREPVN AFTHLGGAVL SFIALLAMLV KVSIKMPSFA AITAIILFGI GMMVLYTASA  60
   61 VYHSVVASER VIYFFRKLDH SMIFILIAGT YAPFCLITLH SANGLLLFCL VYATAICGIV 120
  121 FKMFWFNCPR WLSTAIYITM GWLIVLFFAP LAANLSTGGM VLLVLGGILY TIGGFIYGTK 180
  181 PKWLEFKYMG HHEIFHVFVL LGSLAHFLSV YCYVI

Type	Start	End	Confidence
Cytoplasmic	1	10	0.90
Transmembrane Helix	11	30	0.96
Non-Cytoplasmic	31	38	0.73
Transmembrane Helix	39	62	0.89
Cytoplasmic	63	79	0.81
Transmembrane Helix	80	100	0.88
Non-Cytoplasmic	101	103	0.76
Transmembrane Helix	104	126	0.89
Cytoplasmic	127	132	0.84
Transmembrane Helix	133	153	0.91
Non-Cytoplasmic	154	158	0.77
Transmembrane Helix	159	179	0.92
Cytoplasmic	180	193	0.79
Transmembrane Helix	194	213	0.89
Non-Cytoplasmic	214	215	0.77