YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30265463, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.95
Transmembrane Helix	10	29	0.96
Non-Cytoplasmic	30	49	0.89
Transmembrane Helix	50	70	0.94
Cytoplasmic	71	89	0.87
Transmembrane Helix	90	109	0.97
Non-Cytoplasmic	110	143	0.96
Transmembrane Helix	144	165	0.93
Cytoplasmic	166	188	0.95
Transmembrane Helix	189	213	0.86
Non-Cytoplasmic	214	230	0.89
Transmembrane Helix	231	253	0.91
Cytoplasmic	254	264	0.87
Transmembrane Helix	265	285	0.91
Non-Cytoplasmic	286	311	0.85
Transmembrane Helix	312	334	0.85
Cytoplasmic	335	345	0.81
Transmembrane Helix	346	365	0.95
Non-Cytoplasmic	366	401	0.90
Transmembrane Helix	402	422	0.86
Cytoplasmic	423	442	0.76
Transmembrane Helix	443	462	0.94
Non-Cytoplasmic	463	468	0.81
Transmembrane Helix	469	491	0.91
Cytoplasmic	492	522	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMKSRKTDW PVFLISGGSL LLFVIAVFLN KSYVEGVINS SFAASIKYFG AFWQILLIGT  60
   61 FVVAMCMAFS KYGRVKLGGL EKPEISTTKW LAIIMSTLLA GGGVFWAAAE PMYHLMTVPP 120
  121 IHEGITAGTK EAVMPALAQS YMHWGFLAWT ILGTISAVVM MYGHYHKGMP LKPRTLLYPI 180
  181 FGEKLRKSWL GTLIDAFAII AVAAGTIGPI GFLGLQASYG LQALFNIPDV FTTQLAIIVC 240
  241 VVAVSTISAV TGIDKGIQII SNLNVRLAIL LMVFVLLFGP GGFIIDSFVS SFGFYINEFI 300
  301 PMSTYRGDTT WLGSWTIFFW GWFIGYGPMM AILVSRISRG RTIREIIVAI GIIAPIITTF 360
  361 WFTILGGSGV FYELMKPGSI SSALSESGMP AAMIAITEQL PLSHIIGPAF LLLTILFVVT 420
  421 TGDSMAYSIS MAVTGDGDPR ISLRVFWSLI MGTVAAILLY MGEGSINALQ SFIVVTAVPV 480
  481 SILLFPMLWL APKVAGELAL KQGIVKEEEK TSFLFQKASK SK