YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30265370, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFLPLLLIG IALWIIIDLS YGRIVHLRRV RSRSFPLRQS DFHLYTYGKD LYDTLFTDIK  60
   61 QAKHHVHVLF FIVKNDKISR EFLKLLIDKA KEGIEVRLLL DRLGSHHLSN EAIRSLQKHG 120
  121 VSFSFCHKVK FPFPFFSANQ RNHRKITVID GKIGYIGGFN IGEEYLGHNE RLGLWRDYHL 180
  181 RLTGEGVQDL QKQFLHDWFD DTNQNLLVAS LYFPKQQPGT IQHQFIPTDG AYLQHTFLHL 240
  241 IEGAKKELFI GTPYFIPGRK IMNALLEARK RGVQITILVP EKADHALVRE AKFPYCRKLI 300
  301 QAGCNIYAFQ QGFFHAKVII VDDYICDIGT ANFDMRSLYI NHEINCLLYD KHFIQTVRNK 360
  361 FHKDLGNASL LSFKDVSPHS LIDRGKEWIG TILAFFL

Type	Start	End	Confidence
Signal Peptide	1	22	0.59
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	397	0.77