YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30265293, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLKTIIKE QYENLYLIRR LSLYELKQAY AGNLLGLLWV FLNPLSQIGV YWLVFGLGIR  60
   61 GGAPVHGVPY FVWLVCGLVT WFFVGTTITQ SANSIYSRLN TVSKMNFPLS IIPTYVVISQ 120
  121 LYTHLILIIF ALVIVIFNLG FSTINILELM YGLVASTLFL IALSFLTSTL STMLRDIQLL 180
  181 IQSVTRMLFF LTPIFWEPKE NMSNLLLFII KINPLYYIVE VYRGALIYND TSIVLSWYTL 240
  241 YFWGAVIILF IAGSMLHIRF RKQFVDYL

Type	Start	End	Confidence
Cytoplasmic	1	28	0.91
Transmembrane Helix	29	55	0.78
Non-Cytoplasmic	56	69	0.74
Transmembrane Helix	70	89	0.92
Cytoplasmic	90	113	0.73
Transmembrane Helix	114	141	0.77
Non-Cytoplasmic	142	148	0.60
Transmembrane Helix	149	170	0.89
Cytoplasmic	171	178	0.62
Transmembrane Helix	179	196	0.72
Non-Cytoplasmic	197	236	0.72
Transmembrane Helix	237	258	0.89
Cytoplasmic	259	268	0.85