YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30265252, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.79
Transmembrane Helix	8	34	0.85
Cytoplasmic	35	52	0.75
Transmembrane Helix	53	72	0.79
Non-Cytoplasmic	73	78	0.59
Transmembrane Helix	79	101	0.85
Cytoplasmic	102	112	0.82
Transmembrane Helix	113	135	0.89
Non-Cytoplasmic	136	159	0.90
Transmembrane Helix	160	181	0.92
Cytoplasmic	182	198	0.86
Transmembrane Helix	199	218	0.93
Non-Cytoplasmic	219	232	0.87
Transmembrane Helix	233	253	0.93
Cytoplasmic	254	261	0.87
Transmembrane Helix	262	283	0.87
Non-Cytoplasmic	284	308	0.84
Transmembrane Helix	309	331	0.94
Cytoplasmic	332	341	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEESIAIII LWALIFVYSI LGSIDFGAGF WGMVYAKHPT LAAKLANRYL SPTWEVTNTF  60
   61 LVFVVVAFLG FFPKAAFTLA TVMFVPVMLI LVLVAIRSTF MVFAYSLPKY QHLLRIISGI 120
  121 TGLLIPALLI TVLPVTEGAY ITMSEGKEVL LYGKLLSSPV IYCYMLFGLT SELFLSSLFL 180
  181 ADFAREQGSE DAYKIYRRNA IILGPATLVT AIIALVVMDP ETHWLMQGLI KQFPWFTVSI 240
  241 VLFVIGYSSL WWTNKKYSTL GFPRIAVLAV VAQYAFASYA YGVAHLPYII YPDVTVFTSF 300
  301 TTVETFYALL ILYAIGIAIL LPGFIFFWNL FLKDRTFLKE K