YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21397686
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.96
Transmembrane Helix	15	39	0.87
Cytoplasmic	40	56	0.92
Transmembrane Helix	57	79	0.91
Non-Cytoplasmic	80	94	0.84
Transmembrane Helix	95	116	0.89
Cytoplasmic	117	124	0.91
Transmembrane Helix	125	148	0.89
Non-Cytoplasmic	149	180	0.95
Transmembrane Helix	181	202	0.93
Cytoplasmic	203	219	0.85
Transmembrane Helix	220	239	0.92
Non-Cytoplasmic	240	325	0.97
Transmembrane Helix	326	348	0.94
Cytoplasmic	349	358	0.94
Transmembrane Helix	359	381	0.94
Non-Cytoplasmic	382	409	0.92
Transmembrane Helix	410	429	0.95
Cytoplasmic	430	451	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTVTLARAF FGSSLAFHII FATLGVGLSL MIFISEILYH WKKDSDYAIM AKRWTKAFAI  60
   61 LLGVAIPTGT IVGVQISLLW PGFAKIVGQV ISVPFQIEIF AFFLEALFMS IYVYAADKLP 120
  121 PFMRLISLFF VMIGATASAV LITSANTWMN TPAGFSMGPD GSVFNVDPWK AFFNPSFGTS 180
  181 AFHVVITAYA TGAAVIASIA GFKLLKKNLS EREVAYHKKG LLLGLVVTFI TGATMWLSGH 240
  241 ESAIALHKHS PEKLASAEAL FETTSHAPLS IGGVVDPNTL ELNYALEIPN MLSLLVGLDP 300
  301 NTVVKGLNEF PQETWPPFYT HTLFNLMVGT AAFTFAVAAI ALLYWYFVYR KKGAELPKWL 360
  361 LWGAAACGPV MMLGIEFGWI FSCSGRQPWT IYGMQRTVDA STRADFVGPL FILFIILYIG 420
  421 LGILTVFVLR TFFKKHPLTN DLHHEGGDSR A