YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30265241, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.88
Transmembrane Helix	8	26	0.95
Non-Cytoplasmic	27	36	0.74
Transmembrane Helix	37	59	0.89
Cytoplasmic	60	73	0.80
Transmembrane Helix	74	93	0.93
Non-Cytoplasmic	94	139	0.93
Transmembrane Helix	140	158	0.95
Cytoplasmic	159	177	0.89
Transmembrane Helix	178	197	0.93
Non-Cytoplasmic	198	213	0.83
Transmembrane Helix	214	235	0.92
Cytoplasmic	236	247	0.82
Transmembrane Helix	248	267	0.60
Non-Cytoplasmic	268	295	0.60
Transmembrane Helix	296	314	0.68
Cytoplasmic	315	321	0.65
Transmembrane Helix	322	344	0.89
Non-Cytoplasmic	345	359	0.51
Transmembrane Helix	360	382	0.48
Cytoplasmic	383	405	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAYRFPLIL LSSILIGGFI GYFMGTDAVA LKPLGDIFLN LMFTIVVPLV FFSIASSIAN  60
   61 MDGLKRFGKI MSSMAGTFLF TSILAAIFMI IVVKVFPPAQ GVVLELTQPD KAEKAVSVAD 120
  121 QIVGILTVSD FSKLLSRENM LALIFFSILM GIATSAVGEK GKPFATFLQA GAEISMKVVS 180
  181 FIMYYAPIGL AAYFAALVGE FGPQLLGTYF RAAMVYYPAS LIYFFVFFTF YAYLAGRKQG 240
  241 VQVFWKNMVS PTVTSLATCS SAASIPANLE ATKKMGISSD VRETVILLGS TLHKDGSVLG 300
  301 GVLKIAFLFG IFNMEFEGPK TLAIALVVSL LVGTVMGAIP GGGMIGEMLI VSLYGFPPEA 360
  361 LPIIAAISTI IDPPATMLNV TADNACAVMT ARLVEGKNWI KNKFA