YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259903, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.93
Transmembrane Helix	6	28	0.91
Cytoplasmic	29	44	0.97
Transmembrane Helix	45	67	0.88
Non-Cytoplasmic	68	72	0.80
Transmembrane Helix	73	92	0.93
Cytoplasmic	93	100	0.88
Transmembrane Helix	101	122	0.92
Non-Cytoplasmic	123	130	0.76
Transmembrane Helix	131	151	0.90
Cytoplasmic	152	156	0.81
Transmembrane Helix	157	176	0.93
Non-Cytoplasmic	177	183	0.77
Transmembrane Helix	184	203	0.97
Cytoplasmic	204	210	0.79
Transmembrane Helix	211	233	0.87
Non-Cytoplasmic	234	239	0.72
Transmembrane Helix	240	260	0.93
Cytoplasmic	261	291	0.89
Transmembrane Helix	292	309	0.95
Non-Cytoplasmic	310	317	0.61
Transmembrane Helix	318	338	0.93
Cytoplasmic	339	357	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQVIYAIL ASFITVLVVT PLVIKLAFKI GATDKPNARK VHQKIMPRLG GLAIFIGVAV  60
   61 GFVVGGLYEQ RMLSITLGAI IIVIIGILDD MYELSAKVKF GGQLLVAIMI VKSGLLVQVL 120
  121 YIPILGDTEL GWLAYPITVF WIVGITNAIN LIDGLDGLSA GISSIVLATL AYMAFTSPWG 180
  181 TGTAIILPLA LIALASTLGF LFYNFHPAKI FMGDTGALFL GYCISVISLL GLYKSVTLFS 240
  241 FIVPVIILGV PVFDTTFAII RRIVNKKPIS APDKSHLHHR LLAMGFSHRK TVLIIYAFGI 300
  301 FFSVNAIIFS SATLWLSIIL LFILIFFTEI IAEVIGLVHE RYKPLISFYK KVKKRED