YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259804, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.96
Transmembrane Helix	37	57	0.96
Non-Cytoplasmic	58	76	0.91
Transmembrane Helix	77	97	0.91
Cytoplasmic	98	114	0.72
Transmembrane Helix	115	134	0.72
Non-Cytoplasmic	135	140	0.54
Transmembrane Helix	141	161	0.89
Cytoplasmic	162	169	0.56
Transmembrane Helix	170	189	0.88
Non-Cytoplasmic	190	213	0.58
Transmembrane Helix	214	235	0.90
Cytoplasmic	236	252	0.53
Transmembrane Helix	253	273	0.70
Non-Cytoplasmic	274	274	0.23
Transmembrane Helix	275	292	0.70
Cytoplasmic	293	301	0.59
Transmembrane Helix	302	322	0.91
Non-Cytoplasmic	323	327	0.59
Transmembrane Helix	328	349	0.90
Cytoplasmic	350	354	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITLDYRNKE NVEVDSSLHN ESRSASAFRS KKEARRYWIV LITLIALGLL SSYGLLVYNN  60
   61 PVPIDSPSFI PVVKRRIVAI VAMIIAAVCH SLSTVAFQSI TNNKIITPSL LGFESLYSAI 120
  121 QTSTVFFFGA SALINFNGIG SFLFQVVVMV FMSLILYGWL LSGKYGNLQL MLLVGIIIGT 180
  181 GLNSVSTFMR KLLAPSEFDI LQARLFGSVN HADPAYFPIV IPMIIIVAVL IFAHSKNLNV 240
  241 LSLGKDVATS FGVKYQPSVI YTLVLVAILM SISTALIGPL TFYGFLVATL SYQAAATYDH 300
  301 RYIFPMAFAI GFLIMTSAYF LMYHVFHAQG VVSVIIELFG GIIFLTIVLR KRAL