YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259778, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.90
Transmembrane Helix	14	33	0.94
Cytoplasmic	34	68	0.85
Transmembrane Helix	69	90	0.85
Non-Cytoplasmic	91	97	0.68
Transmembrane Helix	98	121	0.84
Cytoplasmic	122	145	0.92
Transmembrane Helix	146	163	0.95
Non-Cytoplasmic	164	183	0.80
Transmembrane Helix	184	202	0.96
Cytoplasmic	203	211	0.77
Transmembrane Helix	212	234	0.87
Non-Cytoplasmic	235	241	0.86
Transmembrane Helix	242	265	0.81
Cytoplasmic	266	300	0.92
Transmembrane Helix	301	323	0.87
Non-Cytoplasmic	324	344	0.90
Transmembrane Helix	345	368	0.88
Cytoplasmic	369	382	0.96
Transmembrane Helix	383	405	0.91
Non-Cytoplasmic	406	411	0.82
Transmembrane Helix	412	433	0.93
Cytoplasmic	434	476	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVLEQFVSS TNTILWSYIL IAMLIGLGLY FSVKLKFVQI THLGEMIRLM SDGLTGKTRK  60
   61 KGSVSSFQAF CMSSAARIGI GNLAGVALAI SMGGPGAVFW MWVIAIIGAS SSFVESTLAQ 120
  121 IYKIKDGSGF RGGPAYYMEK GLNKRWMGIW FSILITVSYG LIFNSVQANT VTLAFENAFG 180
  181 LERYIVGIAL AALVAVIIFG GVKSIARMSE MIVPPMALIY IAVAIFVVIK NFYLIPDVFT 240
  241 EIFKGAFGLD SAVGGGIGAA MKYGIQRGLF ANEAGMGSAP NAAATADVTH PAKQGFIQTI 300
  301 GVLVDTFLVC TSTAFIVLCS GAYKATNLEG IELTQNALSS QIGPWASSFL AIIIFLFAFS 360
  361 SLLGNYYYGE TNIEFIKQSK TWLTIYRIAV VGMVLFGSVA TLQVVWNMAD LFMGLMVITN 420
  421 LIAITLLGRF AYAALADYVR QKKQGKDPVF RADSIPGLTN TECWDKSAVT DKEKAV