YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259768, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.67
Transmembrane Helix	15	34	0.94
Cytoplasmic	35	69	0.73
Transmembrane Helix	70	91	0.87
Non-Cytoplasmic	92	99	0.74
Transmembrane Helix	100	123	0.90
Cytoplasmic	124	146	0.92
Transmembrane Helix	147	164	0.95
Non-Cytoplasmic	165	184	0.80
Transmembrane Helix	185	203	0.96
Cytoplasmic	204	216	0.72
Transmembrane Helix	217	236	0.90
Non-Cytoplasmic	237	247	0.71
Transmembrane Helix	248	267	0.84
Cytoplasmic	268	300	0.88
Transmembrane Helix	301	324	0.84
Non-Cytoplasmic	325	345	0.91
Transmembrane Helix	346	369	0.88
Cytoplasmic	370	383	0.94
Transmembrane Helix	384	405	0.92
Non-Cytoplasmic	406	411	0.78
Transmembrane Helix	412	434	0.90
Cytoplasmic	435	477	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDIFSRFLE VTNNILWSYI LIAMLIGFGL YFSFKLKFVQ ITHFGEMVGL ISKGFNRKEK  60
   61 KKDSISPFQA FCLSAAARIG IGNLAGVALA ISMGGPGAVF WMWFIAILGA ATSFVECTLA 120
  121 QIYKVKDGSR FRGGPAYYME KGLNKRWMGV WFSLLITVAY GLIFNSVQAN TVTIAFENAF 180
  181 GLERTIVGAL LALLVAVIIF GGIKSISRIT EMIVPPMAII YIGVAIFVVI NNFTMLPSIF 240
  241 TEIFNSAFGL DQAVAGGIGA AIKFGIQRGL FATEAGMGSS PNAAATSDVS HPVKQGLVQA 300
  301 LGVFVDTFLV CTSTAFIVLC SGLYKGTNLE GIELTQQALS SQIGPWASTF LAIIIFLFAF 360
  361 SSLLGNYYYG ETNIAFIKES KTWLMIYRVA VVGMVFFGSI AALKTVWSLA DLFMGLMVFT 420
  421 NLIAISFLSK FAYAALVDYM KQKKQGKDPV FVASSIPGLQ NTECWDGQDV EENKKAV