YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30265088, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.50
Transmembrane Helix	5	23	0.66
Cytoplasmic	24	28	0.55
Transmembrane Helix	29	47	0.80
Non-Cytoplasmic	48	57	0.70
Transmembrane Helix	58	78	0.91
Cytoplasmic	79	91	0.85
Transmembrane Helix	92	113	0.92
Non-Cytoplasmic	114	120	0.75
Transmembrane Helix	121	141	0.95
Cytoplasmic	142	152	0.92
Transmembrane Helix	153	175	0.90
Non-Cytoplasmic	176	182	0.73
Transmembrane Helix	183	204	0.93
Cytoplasmic	205	213	0.92
Transmembrane Helix	214	235	0.86
Non-Cytoplasmic	236	240	0.67
Transmembrane Helix	241	259	0.80
Cytoplasmic	260	268	0.74
Transmembrane Helix	269	288	0.80
Non-Cytoplasmic	289	295	0.68
Transmembrane Helix	296	318	0.90
Cytoplasmic	319	334	0.78
Transmembrane Helix	335	355	0.80
Non-Cytoplasmic	356	361	0.54
Transmembrane Helix	362	379	0.78
Cytoplasmic	380	399	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLIFEVGT ALVLVAIAAV IAGKFKFSVI PFLIVLGMLV GPHAPTIGVI DFKFIESASV  60
   61 ISFLGRIGVL FLLFYLGLEF SMKKLIKSGR SIAIGGTIYI LINFSLGLLY GFIMGFPLLE 120
  121 ILIIAGIITI SSSAIVAKVL VDLRRTGNNE TELILGIIMF EDIFLAVYLS VVSGLVLGDH 180
  181 ASFLGALTSI GIALGYMLLF FIVARKATPL LNKLLNISSD EIFIIVVFAS LFFIAGFSET 240
  241 IHVAEAIGAL LLGLVFSETE HSDRIEHLVV PFRDFFGAIF FFSFGLSIDP FSLGGAIWLT 300
  301 LGAVLLTIIG NFVAGMIAGR QAGLSHKAST NIGLTIVSRG EFSIIMANIG IAGGLMSVLK 360
  361 PFSALYVLIL SILGPLLTKE SKNVYKLLNK IFKWDMKKS